Submit query
     
Click here to show/hide the option menu Clear this form Show help for the chosen program
  • Select the program of choice.
  • Paste your query in the query box. Click Submit button to pass on the query with default options. Please note that some programs might have some options/parameters that are required. Also note that SeWeR doesn't check whether the required option(s)/parameter(s) is supplied or not. See program description for details.
  • Click Options button to fill up options. The button is a toggle. Clicking it again will close the option.
  • Click Customize to customize this search. Fill up all the options that you require, then click Customize. SeWeR will open another window with a customized page. Save that file on your computer.
  • Click Help to check the help page of the selected program. SeWeR will open a new window to show the help page.
  • Click Submit to pass on the query. SeWeR will open a new window for results.
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Copyright © 2000 Malay Kumar Basu
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curiouser@ccmb.ap.nic.in
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entrez protein search
Search exclude patents   
From To
Use the format YYYY/MM/DD; month and day are optional.
protparam
Enter a SWISS-PROT/TrEMBL accession number or a sequence identifier
psipred
E-Mail address
Short name of sequence
Prediction Method
Predict Secondary Structure (PSIpred)
Predict Transmembrane Topology (MEMSAT)
Fold Recognition (GenTHREADER)
Fold Recognition (GenTHREADER with multiple sequences)
scanprosite
SWISS-PROT/TrEMBL accession number or a sequence identifier
Exclude patterns with a high probability of occurrence
Entrez
Search for a protein sequence using Enterz at NCBI server. Input type-key-words. Required option-none.
ProtParam
Calculate different physico-chemical parameters of a protein sequence. Input type-protein sequence. Required option-none.
PSIPred
Secondary structure Prediction. Winner of Critical Assessment of Protein Structure Prediction 1998 (CASP3). Correct upto 77%. Input type-protein sequence. Required option- email address.
ScanProsite
Search for PROSITE pattern in your protein sequence. Input type-protein sequence. Required option-none.