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Copyright © 2000 Malay Kumar Basu
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curiouser@ccmb.ap.nic.in
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entreZ nucleotide search
Limited to
ExcludeESTs STSs GSS working draft patents all
From To Use the format YYYY/MM/DD; month and day are optional.
webcutter
Sequence title
 Display
Restriction Map by enzyme name by base pair
Type of analysis
Linear Circular Find sites which may be introduced by silent mutagenesis
Enzymes
All
Not cutting
Enzymes cutting once
Enzymes cutting exactly times
Enzymes cutting at least times, and at most times
highlights for enzymes from the polylinker
Enzymes to include in the analysis
All enzymes in the database
Only enzymes with recognition sites equal to or greater than bases long
Only the following enzymes
translate
EMBL Accession number
Translation table
Frame Complement
Start Position End Position
Protein Machine
Translate a DNA sequence into protein at EBI server. Input type- DNA. Required option-none.
Webcutter
One of the best programs for restriction analysis. Go to the home for complete features. Input type DNA. Required option-none.
Entrez
Retrieve a DNA sequence from Genbank at NCBI server. Input type key-words. Required option-none.
GeneMark
Predict ORF in your sequence. Input type: DNA sequence. Required option-none.

genemark

Sequence title

Species

Rbs model

Use alternate genetic code:
Eukaryote (e.g. Yeast, ATG = only start) Mycoplasma (TGA = Tryptophan)

Window size

Step size

Threshold

Graphical output options
Generate PostScript graphics
Mark orfs on graph
Mark regions on graph
Mark stop codons on graph
Mark start codons on graph
Mark frameshifts on graph
Mark putative exon splice sites
Print graph in landscape format
Email address (required for graphical output)

Text output options
List open reading frames (ORFs) predicted as coding sequences (CDSs)
List regions of interest
List putative eukaryotic splice sites
Write protein translations of ORFs
Write nucleotide transcripts of ORFs
Write protein translations of regions
Write nucleotide transcripts of regions
Write protein translations of putative exons
Write nucleotide transcripts of putative exons