Submit query
     
Click here to show/hide the option menu Clear this form Show help for the chosen program
  • Select the program of choice.
  • Paste your query in the query box. Click Submit button to pass on the query with default options. Please note that some programs might have some options/parameters that are required. Also note that SeWeR doesn't check whether the required option(s)/parameter(s) is supplied or not. See program description for details.
  • Click Options button to fill up options. The button is a toggle. Clicking it again will close the option.
  • Click Customize to customize this search. Fill up all the options that you require, then click Customize. SeWeR will open another window with a customized page. Save that file on your computer.
  • Click Help to check the help page of the selected program. SeWeR will open a new window to show the help page.
  • Click Submit to pass on the query. SeWeR will open a new window for results.
Home | NucleicAcid | Protein | Database | PCR | Alignment | Tools | Bookmarklets | Customize

Copyright © 2000 Malay Kumar Basu
Send your comments/suggestions/bug-report to me:
curiouser@ccmb.ap.nic.in
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pubmed
Field only items with abstracts 
Publication Type Language
Entrez date Subsets
Date From To
Use the format YYYY/MM/DD; month and day are optional.
blocks search
Email (optional) Database
Cutoff expected value Amount of output
Sequence type
For DNA Query

Strands to search Genetic code
scanprosite
SWISS-PROT/TrEMBL accession number or a sequence identifier
Exclude patterns with a high probability of occurrence
PubMed
Search bibliographic database at NCBI. Input type-key-word. Can accept boolean search. Required option-none.
Blocks Searcher
Search BLOCKS database for similarity. Input type- protein or DNA sequence. Required options-none.
ScanProsite
Search for PROSITE pattern in your protein sequence. Input type-protein sequence. Required option-none.
BLASTP
Search a protein sequence against the protein sequences on NCBI server. Query type-Protein Sequence. Required option- none

blastp

Set subsequence: From To

Database Do CD-search


Limit by Entrez query

or select from

Composition based statistics

Choose Filter:
Low complexity Mask for lookup table only Mask lower case

Expect

Word Size

Matrix

Gap cost

PSSM

Other Advanced option

PHI pattern


Show overview NCBI GI

Show Format

Number of descriptions

Number of alignments

Alignment view

Format for PSI-BLAST with inclusion threshhold

Layout

Format on the result page

Autoformat

Send result by e. mail

BLASTN
Search a nucleotide sequence against GenBank on NCBI server. Query type: DNA sequence. Required option: None.

blastn

Set subsequence: From To

Database


Limit by Entrez query or select from

Choose filter: Low complexity Human repeats Mask for lookup table only Mask lower case

Expect Word size

Other advanced option


Show: graphical overview NCBI-GI

Format type

Number of descriptions

Number of alignments

Alignment view

Layout

Formatting options on page with results

Autoformat

Send results by e-mail

Translated BLAST
Translated BLAST are a set of BLAST programs that first translate your DNA sequence and searches database of protein sequence/ translated nucleotide sequence. Default program BLASTX.Query type: DNA sequence. Required option: none.

Translated BLAST

Choose program

Set subsequence: From To

Choose database

Genetic code


Limit by Entrez query or select from

Choose filter Low complexity Mask for lookup table only Mask lower case

Expect

Word Size

Matrix

Gap cost

Other advanced option


Show: overview NCBI-GI

Format

Number of descriptions

Number of alignments

Alignment view

Layout

Formatting options on page with results

Autoformat

Send results by e-mail